miRBase entry: mdm-MIR11012b

Stem-loop mdm-MIR11012b


Accession
MI0035666
Description
Malus domestica mdm-MIR11012b precursor miRNA


Sequence

uuucauguugauugccauuauaagcuauuggaaauaagggugcauugcauaggcagcaguaacaaaucugcguauacuaguuugaagaaagauuucgaggggagaaaaaauuacugacaauuuacguaugagggggacauugaaggauuucaaggguuucaaauuuuuaaugucccacucaucuguaaaucgucgauaauucuuucuucucuugaaauccuuuuucaaacuaguauacgcagauuuauuaCCGCUGCCUAUGCAAUGCACCCcuauucccggugguuuauaaugacaaucaacaugaaacccuucacauuu
((((((((((((((.((((((((((((((((.((((.((((((((((((((((((((.((((.((((((((((((((((((((((((((.(((((((((((((((((.(((((.((((.(((((((.(((((.((((((((((((.((((.((....)).)))))))))))))))).))))).))))))).)))).))))).))))))))))))))))).)))))))))))))))))))))))))).)))).)))))))))))))))))))).)))).)))))))))))))))).))))))))))))))............

Structure
------------              c                a    a                    a    c                          a                 a     c    a       u     g            g    c  g 
            uuucauguugauug cauuauaagcuauugg aaua gggugcauugcauaggcagc guaa aaaucugcguauacuaguuugaagaa gauuucgaggggagaaa aauua ugac auuuacg augag gggacauugaag auuu aa g
            |||||||||||||| |||||||||||||||| |||| |||||||||||||||||||| |||| |||||||||||||||||||||||||| ||||||||||||||||| ||||| |||| ||||||| ||||| |||||||||||| |||| ||  
            aaaguacaacuaac guaauauuugguggcc uuau CCCACGUAACGUAUCCGUCG Cauu uuuagacgcauaugaucaaacuuuuu cuaaaguucucuucuuu uuaau gcug uaaaugu uacuc cccuguaauuuu uaaa uu g
uuuacacuuccc              a                c    c                    C    a                          c                 c     a    c       c     a            -    c  u 


Annotation confidence Not enough data
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Genome context
MDC004277.282: 1174-1494 [-]

Database links

Mature mdm-miR11012b

Accession MIMAT0043615
Description Malus domestica mdm-miR11012b mature miRNA
Sequence 251 - CCGCUGCCUAUGCAAUGCACCC - 272
Evidence experimental
Illumina [1]

References

  1. Identification of apple miRNAs and their potential role in fire blight resistance
    "Kaja E, Szczesniak MW, Jensen PJ, Axtell MJ, McNellis T, Makalowska I"
    Tree Genet Genomes. (2014) 11:812