Stem-loop mdm-MIR169k

Accession

MI0035667

Description

Malus domestica mdm-MIR169k precursor miRNA

Literature search

4 open access papers mention mdm-MIR169k
(9 sentences)

Sequence

aucaaaaggaaaaggaaauauugaagagaguguauaacaugaagagaagaguguuguuuggUAGCCAAGGAUGACUUGCCUGcugugcugccgcgcgcuccuaauuccaauccaauccacgagguggcaguacguaaguacucacucuccuacguguuguuggguucuccgcagcagccaccaggcagucuccuuuggcuaacuugacarccucuucuucucaugcuauacccuucucuucuucuucuucuucuucuucuuc
.....(((((.(((((......((((((((.(((((.(((((.((((((((.(.((((.(((((((((((..((((.(((((.((.(((((.(((.............((((((((.(((((((.((.(((((....)))))...)).))).))))..))))))))...))).))))))).)))))))))..)))))))).))).)))).))))))))).))))).))))).).)))))))......))))).)))))....

Structure

aucaa     a     aauauu       - u     a     a        u u    u   -        AU    U     c  u     c   cgcuccuaauucc        -c    -   u  --c     g 
     aagga aagga      gaagaga g guaua cauga gagaagag g uguu ggU AGCCAAGG  GACU GCCUG ug gcugc gcg             aauccaau  cacg agg gg   aguac u
     ||||| |||||      ||||||| | ||||| ||||| |||||||| | |||| ||| ||||||||  |||| ||||| || ||||| |||             ||||||||  |||| ||| ||   |||||  
     uucuu uucuu      cuucucu c cauau guacu uucuucuc c acag uca ucgguuuc  cuga cggac ac cgacg cgc             uuggguug  gugc ucc cu   ucaug a
-cuuc     c     cuucuu       u c     c     c        - r    u   a        cu    -     c  -     a   ----------cuc        uu    a   u  cac     a 

Annotation confidence Not enough data

Genome context

MDC002619.349: 91031-91292 [+]

Mature mdm-miR169k

• Accession: MIMAT0043616
• Description: Malus domestica mdm-miR169k mature miRNA
• Sequence: 62 - UAGCCAAGGAUGACUUGCCUG - 82
• Evidence: experimental ; Illumina [1]

References

1. Identification of apple miRNAs and their potential role in fire blight resistance
   "Kaja E, Szczesniak MW, Jensen PJ, Axtell MJ, McNellis T, Makalowska I"
   Tree Genet Genomes. (2014) 11:812