miRBase entry: mdm-MIR11017

Stem-loop mdm-MIR11017


Accession
MI0035678
Description
Malus domestica mdm-MIR11017 precursor miRNA


Sequence

aacuaggaagccuuccuugguCUCUAAUCUGCCCAACAACUUcggcaaucugccycauuuguuucucuaguugauccacccuuyuguuuugauuuucwugcyccugagucaagguggaraguagcuuaacaaguguaucauuauucaaaumauuaccugaaguaguuugggcagguuguggargagcuugugugggugcgu
.........((((.((..(.(((((((((((((((((.(((((((((...)))).((((((((...(((.(...((((((........(((((((..........))))))))))))).).)))...)))))))).......................))))).).))))))))))..)))).)).)..).).))))....

Structure
aacuaggaa    u - uu g  -    --          - A     -----------ggcaaucugccy        ucu   g uga      cuuyuguu       ucwu 
         gccu c c  g uC UCUA  AUCUGCCCAA C ACUUc                       cauuuguu   cua u   uccacc        uugauuu    g
         |||| | |  | || ||||  |||||||||| | |||||                       ||||||||   ||| |   ||||||        |||||||     
         uggg g g  c ag aggu  uggacggguu g ugaag                       gugaacaa   gau a   aggugg        aacugag    c
-----ugcg    u u uu g  r    gu          u a     uccauuamuaaacuuauuacuau        uuc   g --r      --------       uccy 


Annotation confidence Not enough data
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Genome context
MDC005641.309: 1113-1313 [+]

Database links

Mature mdm-miR11017

Accession MIMAT0043627
Description Malus domestica mdm-miR11017 mature miRNA
Sequence 22 - CUCUAAUCUGCCCAACAACUU - 42
Evidence experimental
Illumina [1]

References

  1. Identification of apple miRNAs and their potential role in fire blight resistance
    "Kaja E, Szczesniak MW, Jensen PJ, Axtell MJ, McNellis T, Makalowska I"
    Tree Genet Genomes. (2014) 11:812