miRBase entry: mdm-MIR11018

Stem-loop mdm-MIR11018


Accession
MI0035679
Description
Malus domestica mdm-MIR11018 precursor miRNA


Sequence

cuucugugguuCCAACAUCAAAAGUAAAAGGAAcaaaugugauuggaauccucgaaugucauggaauacuauuaguuuaugauuccaagguaacaggcaaagucgauaaaaaagagccucaaauacguaauucucgauaugauuuuuccuuacuauucuucucuuuuuguuuuggauguugcaga
..((((......(((((((.((((((((((((..........((((((((...((((...((((....))))..))))..))))))))((((..(((.((((((.(((....((((...(......)...))))...))))))))).))))))).......)))))))))))).)))))))))))

Structure
cu    ugguuC       A            Acaaaugugauuggaauccucgaaugucauggaauacuauuaguuuaugauuccaa    ac   c      g   aaaa    ccu aa 
  ucug      CAACAUC AAAGUAAAAGGA                                                        ggua  agg aaaguc aua    agag   c  a
  ||||      ||||||| ||||||||||||                                                        ||||  ||| |||||| |||    ||||   |   
  agac      guuguag uuuuguuuuucu                                                        ucau  ucc uuuuag uau    ucuu   g  u
--    ------       g            -------------------------------------------------cuucuua    --   u      -   -agc    aau ca 


Annotation confidence Not enough data
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Genome context
MDC005320.543: 4415-4599 [+]

Database links

Mature mdm-miR11018

Accession MIMAT0043628
Description Malus domestica mdm-miR11018 mature miRNA
Sequence 12 - CCAACAUCAAAAGUAAAAGGAA - 33
Evidence experimental
Illumina [1]

References

  1. Identification of apple miRNAs and their potential role in fire blight resistance
    "Kaja E, Szczesniak MW, Jensen PJ, Axtell MJ, McNellis T, Makalowska I"
    Tree Genet Genomes. (2014) 11:812