miRBase entry: mdm-MIR11019

Stem-loop mdm-MIR11019


Accession
MI0035680
Description
Malus domestica mdm-MIR11019 precursor miRNA


Sequence

uggguauguggaaaaccagaugguugaucauCCAGAUGAUCAUAAUCUCCUGAaagugcuugauucagaaaggaugaaaugggaugguauugucccgacuacaguuucgucauaugaggguggaagaaaauggucgaaguuguacuguuugucaguaaaaguacaguuucggccauuuucuuccacuguccugugacuaaaccguagucgggccaacaccaucccauuuugccuucaucuuuucugaaucaagcacuuucaggagauuaugaucauccggaugaucaaccaucuaguuuucca
........((((((((.((((((((((((((((.((((((((((((((((((((((((((((((((((((((((((((((((((((((.(((.(((((((((.((((.((((((.((.((((((((((((((((((((((((((((.............)))))))))))))))))))))))))))).)).)))))).)))).))))))))).))).))))))))))......)))))))))))))))))))))))))))))))))))))))))))).)))))))))))))))).))))))))

Structure
uggguaug        c                A                                            ------          a   u         a    c      u  g                            guuug 
        uggaaaac agaugguugaucauCC GAUGAUCAUAAUCUCCUGAaagugcuugauucagaaaggaugaa      augggauggu uug cccgacuac guuu gucaua ga gguggaagaaaauggucgaaguuguacu     u
        |||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||      |||||||||| ||| ||||||||| |||| |||||| || ||||||||||||||||||||||||||||     c
        accuuuug ucuaccaacuaguagg cuacuaguauuagaggacuuucacgaacuaagucuuuucuacuu      uacccuacca aac gggcugaug caaa cagugu cu ucaccuucuuuuaccggcuuugacauga     a
--------        a                c                                            ccguuu          c   c         c    u      c  g                            aaaug 


Annotation confidence Not enough data
Do you think this miRNA is real?

Genome context
MDC020582.252: 12264-12566 [+]

Database links

Mature mdm-miR11019

Accession MIMAT0043629
Description Malus domestica mdm-miR11019 mature miRNA
Sequence 32 - CCAGAUGAUCAUAAUCUCCUGA - 53
Evidence experimental
Illumina [1]

References

  1. Identification of apple miRNAs and their potential role in fire blight resistance
    "Kaja E, Szczesniak MW, Jensen PJ, Axtell MJ, McNellis T, Makalowska I"
    Tree Genet Genomes. (2014) 11:812