Stem-loop seu-MIR11042

Accession

MI0035707

Description

Salicornia europaea seu-MIR11042 precursor miRNA

Sequence

auaauguugggucgagugacaagaaaaguaaagcaaguugcucuuguuuugacucaauagccacuugaaauggcauuuucccuucacgauucuuuauuuuccauggagugaaguaauuaguugccucauuagagaucucacuggcugaugauguuacuucuuuuugguacucacguacaacaauuaucccuaucucuucauuacuauuucuugcugcaauguguaauggagugucacccCUUUCCUUUUCAGUCGUCUGACAaacuaaauuc
....(((((((.(((.(((.(((.((((.((((((((.....))))))))((((((.(((((((((.....((((.((...((((((....................)))))).....)).))))......))).......)))))).))).)))...........((((....))))...............(.(((((((((((((.(.....).)))).))))))))).)......)))).))).))).))))))))))..........

Structure

------auaa       u   g   c   a    --------------------------------------------------------------uaaagcaaguugcucuuguuuu   -   a      -------   -gaaau    u  --ucc      gauucuuua 
          uguuggg cga uga aag aaag                                                                                    gac uca uagcca       cuu      ggca uu     cuucac         u
          ||||||| ||| ||| ||| ||||                                                                                    ||| ||| ||||||       |||      |||| ||     ||||||          
          ACAGUCU GCU ACU UUC UUUC                                                                                    uug agu gucggu       gag      ccgu ga     gaagug         u
cuuaaaucaa       -   G   U   C    cccacugugagguaauguguaacgucguucuuuaucauuacuucucuaucccuauuaacaacaugcacucaugguuuuucuuca   u   a      cacucua   auuacu    u  uuaau      agguaccuu 

Annotation confidence Not enough data

Genome context

Unknown

Mature seu-miR11042

• Accession: MIMAT0043656
• Description: Salicornia europaea seu-miR11042 mature miRNA
• Sequence: 240 - CUUUCCUUUUCAGUCGUCUGACA - 262
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 25848810
   High-throughput deep sequencing reveals that microRNAs play important roles in salt tolerance of euhalophyte Salicornia europaea
   Feng J, Wang J, Fan P, Jia W, Nie L, Jiang P, Chen X, Lv S, Wan L, Chang S, Li S, Li Y
   BMC Plant Biol (2015) 15:63