miRBase entry: eel-mir-11056

Stem-loop eel-mir-11056


Accession
MI0035723
Description
Electrophorus electricus eel-mir-11056 precursor miRNA


Sequence

ugguacacucuuccUAAACUGGCAAGUAGGAAACAUuuguguauauauauaacuguuuCAUACUCGCCAGUUUAGGAAGagugu
....(((((((((((((((((((.((((.((((((.((((((....)))))).)))))).)))).)))))))))))))))))))

Structure
uggu                   A    G      U      a 
    acacucuuccUAAACUGGC AGUA GAAACA uugugu u
    ||||||||||||||||||| |||| |||||| ||||||  
    ugugaGAAGGAUUUGACCG UCAU Cuuugu aauaua a
----                   C    A      c      u 


Annotation confidence Not enough data
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Genome context
scaffold674: 73113-73196 [+]

Database links

Mature eel-miR-11056-5p

Accession MIMAT0043678
Description Electrophorus electricus eel-miR-11056-5p mature miRNA
Sequence 15 - UAAACUGGCAAGUAGGAAACAU - 36
Evidence experimental
Illumina [1]

Mature eel-miR-11056-3p

Accession MIMAT0043679
Description Electrophorus electricus eel-miR-11056-3p mature miRNA
Sequence 59 - CAUACUCGCCAGUUUAGGAAG - 79
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 25887781
    Unique patterns of transcript and miRNA expression in the South American strong voltage electric eel (Electrophorus electricus)
    Traeger LL, Volkening JD, Moffett H, Gallant JR, Chen PH, Novina CD, Phillips GN Jr, Anand R, Wells GB, Pinch M, Güth R, Unguez GA, Albert JS, Zakon H, Sussman MR, Samanta MP
    BMC Genomics (2015) 16:243