miRBase entry: eel-mir-11062

Stem-loop eel-mir-11062


Accession
MI0035729
Description
Electrophorus electricus eel-mir-11062 precursor miRNA


Sequence

aacaAAGGGCUAUGUUUACACUUAGUacccgcuucugcaauggguuUAUAAUGUCAGCAUAGUCCGACaaaucuuaguugggac
......((((((((((.(((.(((..((((((....))...))))...)))))).))))))))))...................

Structure
-------------aacaAA          U   C   -GU    ---  u 
                   GGGCUAUGUU ACA UUA   accc   gc u
                   |||||||||| ||| |||   ||||   ||  
                   CCUGAUACGA UGU AAU   uggg   cg c
caggguugauucuaaaCAG          C   -   AUu    uaa  u 


Annotation confidence Not enough data
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Genome context
scaffold859: 110930-111013 [+]

Database links

Mature eel-miR-11062-5p

Accession MIMAT0043688
Description Electrophorus electricus eel-miR-11062-5p mature miRNA
Sequence 5 - AAGGGCUAUGUUUACACUUAGU - 26
Evidence experimental
Illumina [1]

Mature eel-miR-11062-3p

Accession MIMAT0043689
Description Electrophorus electricus eel-miR-11062-3p mature miRNA
Sequence 47 - UAUAAUGUCAGCAUAGUCCGAC - 68
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 25887781
    Unique patterns of transcript and miRNA expression in the South American strong voltage electric eel (Electrophorus electricus)
    Traeger LL, Volkening JD, Moffett H, Gallant JR, Chen PH, Novina CD, Phillips GN Jr, Anand R, Wells GB, Pinch M, Güth R, Unguez GA, Albert JS, Zakon H, Sussman MR, Samanta MP
    BMC Genomics (2015) 16:243