miRBase entry: lja-MIR7533c

Stem-loop lja-MIR7533c


Accession
MI0035736
Description
Lotus japonicus lja-MIR7533c precursor miRNA


Sequence

cuuuaaaauuuaaaauggauggcucagauuuuggauggagaggggauggagagAAGUUGGAUGGAGAGGAUCcaaauccgaaaaaacggguuuggauucucuccauccauguucccuccauccucucuccauccaaaucugagccauugauuuugaaauuuaaag
(((((((.((((((((.((((((((((((((.(((((((((((((((((((.(((..(((((((((((((((((((((((......)))))))))))))))))))))))..))).))))))))))))))))))))))))))))))))).)))))))).)))))))

Structure
       a        g              u                   a   GU                       aa 
cuuuaaa uuuaaaau gauggcucagauuu ggauggagaggggauggag gAA  UGGAUGGAGAGGAUCcaaauccg  a
||||||| |||||||| |||||||||||||| ||||||||||||||||||| |||  |||||||||||||||||||||||   
gaaauuu aaguuuua uuaccgagucuaaa ccuaccucucuccuaccuc cuu  accuaccucucuuagguuugggc  a
       a        g              -                   c   gu                       aa 


Annotation confidence Not enough data
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Genome context
Chr2: 27609674-27609838 [+]

Database links

Mature lja-miR7533c-5p

Accession MIMAT0043700
Description Lotus japonicus lja-miR7533c-5p mature miRNA
Sequence 54 - AAGUUGGAUGGAGAGGAUC - 72
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 25967282
    micro RNA 172 (miR172) signals epidermal infection and is expressed in cells primed for bacterial invasion in Lotus japonicus roots and nodules
    "Holt DB, Gupta V, Meyer D, Abel NB, Andersen SU, Stougaard J, Markmann K"
    "New Phytol (2015) 208:241-256