miRBase entry: lja-MIR11067

Stem-loop lja-MIR11067


Accession
MI0035737
Description
Lotus japonicus lja-MIR11067 precursor miRNA


Sequence

gggucagcucgACGGGUUGGCUAAAUGAGCcggguuagguugguuaaauuccaguucgaaaagaacuuggguuagugcaacccgacucguugaacucgcggguuagacgggccaaccgcgggUCAAGCGAGCCAACCCGUCGgguuagaguu
.(.(((((((((((((((((((...(((.(((((((.((((.(((.(((((((((((((..((...(((((((.....)))))))))..))))))).).))))).))).)))))))).))).)))....))))))))))))))))).)).).

Structure
g g  -                 -AAA   G   -    a    g   a     - -       aa  aac       a 
 g uc agcucgACGGGUUGGCU    UGA Ccg gguu gguu guu aauuc c aguucga  ag   uuggguu g
 | || |||||||||||||||||    ||| ||| |||| |||| ||| ||||| | |||||||  ||   ||||||| u
 u ag uuggGCUGCCCAACCGA    ACU ggc ccaa ccgg cag uuggg g ucaaguu  uc   agcccaa g
u g  a                 GCGA   g   g    -    g   a     c c       gc  ---       c 


Annotation confidence Not enough data
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Genome context
Chr1: 20061619-20061770 [+]

Database links

Mature lja-miR11067-5p

Accession MIMAT0043701
Description Lotus japonicus lja-miR11067-5p mature miRNA
Sequence 12 - ACGGGUUGGCUAAAUGAGC - 30
Evidence experimental
Illumina [1]

Mature lja-miR11067-3p

Accession MIMAT0043702
Description Lotus japonicus lja-miR11067-3p mature miRNA
Sequence 123 - UCAAGCGAGCCAACCCGUCG - 142
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 25967282
    micro RNA 172 (miR172) signals epidermal infection and is expressed in cells primed for bacterial invasion in Lotus japonicus roots and nodules
    "Holt DB, Gupta V, Meyer D, Abel NB, Andersen SU, Stougaard J, Markmann K"
    "New Phytol (2015) 208:241-256