miRBase entry: lja-MIR11068c

Stem-loop lja-MIR11068c


Accession
MI0035740
Description
Lotus japonicus lja-MIR11068c precursor miRNA


Sequence

agcAUCUCUAAUGCAAGGUUCUuaguucuuauuuuuuaguuaagaacuaagaACUUUACCAUUGGAGGUGCu
(((((((((((((.(((((((((((((((((.........)))))))))))))))))..)))))))))))))

Structure
             -C                 uuu 
agcAUCUCUAAUG  AAGGUUCUuaguucuua   u
|||||||||||||  |||||||||||||||||   u
uCGUGGAGGUUAC  UUUCAagaaucaagaau   u
             CA                 uga 


Annotation confidence Not enough data
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Genome context
Chr5: 4834696-4834767 [+]

Database links

Mature lja-miR11068c-5p

Accession MIMAT0043706
Description Lotus japonicus lja-miR11068c-5p mature miRNA
Sequence 4 - AUCUCUAAUGCAAGGUUCU - 22
Evidence experimental
Illumina [1]

Mature lja-miR11068c-3p

Accession MIMAT0043707
Description Lotus japonicus lja-miR11068c-3p mature miRNA
Sequence 53 - ACUUUACCAUUGGAGGUGC - 71
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 25967282
    micro RNA 172 (miR172) signals epidermal infection and is expressed in cells primed for bacterial invasion in Lotus japonicus roots and nodules
    "Holt DB, Gupta V, Meyer D, Abel NB, Andersen SU, Stougaard J, Markmann K"
    "New Phytol (2015) 208:241-256