miRBase entry: lja-MIR11078b

Stem-loop lja-MIR11078b

Accession

MI0035751

Description

Lotus japonicus lja-MIR11078b precursor miRNA

Sequence

guguaaaguuuuuuuagagcgucaacuaauuagauuguaaggauaugucacgucaauuaaugaaauuaaauaaauauuuuacacauucuuaAAAUCUGAUUGGUUGACGGUguaaauaaacuuuacac
(((((((((((.((((.(.(((((((((((((((((.(((((((.(((.............(((((.........)))))))).))))))).))))))))))))))))).).)))).)))))))))))

Structure

           u    g g                 g       a   cacgucaauuaau     uaa 
guguaaaguuu uuua a cgucaacuaauuagauu uaaggau ugu             gaaau   a
||||||||||| |||| | ||||||||||||||||| ||||||| |||             |||||   u
cacauuucaaa aaau U GCAGUUGGUUAGUCUAA auucuua aca             uuuua   a
           u    g G                 A       c   -------------     uaa

Annotation confidence Not enough data

Do you think this miRNA is real?

Genome context

Chr1: 20357567-20357694 [+]

Clustered miRNAs

1 other miRNA is < 10 kb from lja-MIR11078b

Name	Accession	Chromosome	Start	End	Strand	Confidence

Database links

Mature lja-miR11078b-3p

Accession	MIMAT0043720
Description	Lotus japonicus lja-miR11078b-3p mature miRNA
Sequence	92 - AAAUCUGAUUGGUUGACGGU - 111
Evidence	experimental Illumina [1]

References

PubMed ID: 25967282
micro RNA 172 (miR172) signals epidermal infection and is expressed in cells primed for bacterial invasion in Lotus japonicus roots and nodules
"Holt DB, Gupta V, Meyer D, Abel NB, Andersen SU, Stougaard J, Markmann K"
"New Phytol (2015) 208:241-256