miRBase entry: lja-MIR11072c

Stem-loop lja-MIR11072c


Accession
MI0035757
Description
Lotus japonicus lja-MIR11072c precursor miRNA


Sequence

agauuuuggguuaauccucuaauuggucccugugguugugugaccaucugaaauuagucccucccguaaaaucuaaguccucguguuugaaaaaguguguguagcagguccucgccggagggacuaauuuccacacacuuuccaaacacgaggacuuagauuuuacgggAGGGACUAAUUUCAGACGGCcacacaaccacagggacuaauuagaggauuaaccccauauuu
.......(((((((((((((((((((((((((((((((((((.((.(((((((((((((((((((((((((((((((((((((((((((..((((((((((.....(((((((....)).)))))......)))))))))).))))))))))))))))))))))))))))))))))))))))))).)).))))))))))))))))))))))))))))))))))).......

Structure
agauuuu                                   a  a                                           aa          -uagca     -  g 
       ggguuaauccucuaauuggucccugugguugugug cc ucugaaauuagucccucccguaaaaucuaaguccucguguuug  aaagugugug      ggucc uc c
       ||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||  ||||||||||      ||||| ||  
       cccaauuaggagauuaaucagggacaccaacacac GG AGACUUUAAUCAGGGAgggcauuuuagauucaggagcacaaac  uuucacacac      ucagg ag c
uuuauac                                   C  C                                           -c          cuuuaa     g  g 


Annotation confidence Not enough data
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Genome context
Chr0: 6894218-6894448 [+]

Database links

Mature lja-miR11072c-3p

Accession MIMAT0043728
Description Lotus japonicus lja-miR11072c-3p mature miRNA
Sequence 170 - AGGGACUAAUUUCAGACGGC - 189
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 25967282
    micro RNA 172 (miR172) signals epidermal infection and is expressed in cells primed for bacterial invasion in Lotus japonicus roots and nodules
    "Holt DB, Gupta V, Meyer D, Abel NB, Andersen SU, Stougaard J, Markmann K"
    "New Phytol (2015) 208:241-256