miRBase entry: lja-MIR11072g

Stem-loop lja-MIR11072g


Accession
MI0035762
Description
Lotus japonicus lja-MIR11072g precursor miRNA


Sequence

uggccgucugaaauuugucccuccccggaaaaucugaaaaucuaaguccucggguuuggaaaguguguggaaauuagucccucuggcgaggaccugcuacacacauuuuuucaaaugcgaggacuuagauuuuuagauuuuccggggAGGGACUAAUUUCAGACGGCca
(((((((((((((((.((((((((((((((((((((((((((((((((((((.(((((((((((((((((....(((..((((....))))..)))))))))))...))))))))).)))))))))))))))))))))))))))))))))))).)))))))))))))))

Structure
               u                                    g         ---        aaau   uc    u 
uggccgucugaaauu gucccuccccggaaaaucugaaaaucuaaguccucg guuuggaaa   gugugugg    uag  ccuc g
||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||   ||||||||    |||  ||||  
acCGGCAGACUUUAA CAGGGAggggccuuuuagauuuuuagauucaggagc uaaacuuuu   cacacauc    guc  ggag g
               U                                    g         uua        ----   ca    c 


Annotation confidence Not enough data
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Genome context
Chr3: 36812896-36813064 [+]

Database links

Mature lja-miR11072g-3p

Accession MIMAT0043733
Description Lotus japonicus lja-miR11072g-3p mature miRNA
Sequence 148 - AGGGACUAAUUUCAGACGGC - 167
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 25967282
    micro RNA 172 (miR172) signals epidermal infection and is expressed in cells primed for bacterial invasion in Lotus japonicus roots and nodules
    "Holt DB, Gupta V, Meyer D, Abel NB, Andersen SU, Stougaard J, Markmann K"
    "New Phytol (2015) 208:241-256