miRBase entry: lja-MIR11082e

Stem-loop lja-MIR11082e


Accession
MI0035768
Description
Lotus japonicus lja-MIR11082e precursor miRNA


Sequence

cgggacaggguaguuucccaccuauagcuuuugugugguuucuuuacgggaauCACAGAGAGUUGGUUGGACUuaggaggucuug
((((((....(((..(((.(((...(((((((.((((((((((....)))))))))))))))))))).))).)))....))))))

Structure
      aggg   uu   c   uau       g          u 
cgggac    uag  ucc acc   agcuuuu ugugguuucu u
||||||    |||  ||| |||   ||||||| ||||||||||  
guucug    auU  AGG UGG   UUGAGAG ACACuaaggg a
      gagg   -C   U   ---       -          c 


Annotation confidence Not enough data
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Genome context
Chr3: 20995344-20995428 [+]

Database links

Mature lja-miR11082e-3p

Accession MIMAT0043739
Description Lotus japonicus lja-miR11082e-3p mature miRNA
Sequence 54 - CACAGAGAGUUGGUUGGACU - 73
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 25967282
    micro RNA 172 (miR172) signals epidermal infection and is expressed in cells primed for bacterial invasion in Lotus japonicus roots and nodules
    "Holt DB, Gupta V, Meyer D, Abel NB, Andersen SU, Stougaard J, Markmann K"
    "New Phytol (2015) 208:241-256