miRBase entry: lja-MIR11082k

Stem-loop lja-MIR11082k


Accession
MI0035774
Description
Lotus japonicus lja-MIR11082k precursor miRNA


Sequence

accuauagcuuuuugugugguuucguuacgggaauCACAGAGAGUUGGUUGGACU
.((..((((((((..(((((((((......)))))))))))))))))...))...

Structure
--a  -ua        ug         gu 
   cc   uagcuuuu  ugugguuuc  u
   ||   ||||||||  |||||||||   
   GG   GUUGAGAG  ACACuaagg  a
UCA  UUG        --         gc 


Annotation confidence Not enough data
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Genome context
Chr0: 3762356-3762410 [+]

Database links

Mature lja-miR11082k-3p

Accession MIMAT0043746
Description Lotus japonicus lja-miR11082k-3p mature miRNA
Sequence 36 - CACAGAGAGUUGGUUGGACU - 55
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 25967282
    micro RNA 172 (miR172) signals epidermal infection and is expressed in cells primed for bacterial invasion in Lotus japonicus roots and nodules
    "Holt DB, Gupta V, Meyer D, Abel NB, Andersen SU, Stougaard J, Markmann K"
    "New Phytol (2015) 208:241-256