miRBase entry: lja-MIR11072b

Stem-loop lja-MIR11072b


Accession
MI0035779
Description
Lotus japonicus lja-MIR11072b precursor miRNA


Sequence

uaauuggucccugugguuguguggccgacugaaauuagucccuccCGUAAAAUCUAAGUCCUCGUGuuuggaaaguguguggaaauuagucccuccggcgaggaccugcuacacacacuuuuucaaacaCGAGGACUUAGAUUUUACGGgagggacuaauuucagacagccacacaaccacagggaccaauua
(((((((((((((((((((((((((.(.(((((((((((((((((((((((((((((((((((((((((((((((((((((.....(((..((((....))))..)))...))))))).)))))))))))))))))))))))))))))))))))))))))))))).).)))))))))))))))))))))))))

Structure
                         c a                                              -       gaaau   uc    c 
uaauuggucccugugguuguguggc g cugaaauuagucccuccCGUAAAAUCUAAGUCCUCGUGuuuggaaa gugugug     uag  ccuc g
||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||| |||||||     |||  ||||  
auuaaccagggacaccaacacaccg c gacuuuaaucagggagGGCAUUUUAGAUUCAGGAGCacaaacuuuu cacacac     guc  ggag g
                         a a                                              u       --auc   ca    c 


Annotation confidence Not enough data
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Genome context
Chr2: 38582678-38582870 [-]

Database links

Mature lja-miR11072b-5p

Accession MIMAT0043752
Description Lotus japonicus lja-miR11072b-5p mature miRNA
Sequence 46 - CGUAAAAUCUAAGUCCUCGUG - 66
Evidence experimental
Illumina [1]

Mature lja-miR11072b-3p

Accession MIMAT0043753
Description Lotus japonicus lja-miR11072b-3p mature miRNA
Sequence 130 - CGAGGACUUAGAUUUUACGG - 149
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 25967282
    micro RNA 172 (miR172) signals epidermal infection and is expressed in cells primed for bacterial invasion in Lotus japonicus roots and nodules
    "Holt DB, Gupta V, Meyer D, Abel NB, Andersen SU, Stougaard J, Markmann K"
    "New Phytol (2015) 208:241-256