miRBase entry: lja-MIR11097c

Stem-loop lja-MIR11097c


Accession
MI0035789
Description
Lotus japonicus lja-MIR11097c precursor miRNA


Sequence

aagaguuuaauuuugaugcaccgacaauguaaaguuuuuuuacacugucaaucaaccaaauuucaaauauuuguuaugucgcucaauuuaauuaaauaaaaaauuugucguucacacauucaagaaaucugauugguugacaguguaaAAAAAACUUUACACCGUCGGUgcaucaaacuuuuuucucuu
(((((...((.((((((((((((((..((((((((((((((((((((((((((((.((.(((((....((.(((.(((.((.....((((......)))).....)).)))..))).))....))))).)).)))))))))))))).))))))))))))))..)))))))))))))).))....)))))

Structure
     -uuu  u              aa              -              c  a     aaau  u   -u   u  cucaa    au 
aagag    aa uuugaugcaccgac  uguaaaguuuuuuu acacugucaaucaa ca auuuc    au ugu  aug cg     uuua  u
|||||    || ||||||||||||||  |||||||||||||| |||||||||||||| || |||||    || |||  ||| ||     ||||   
uucuc    uu aaacuacgUGGCUG  ACAUUUCAAAAAAa ugugacaguugguu gu uaaag    ua aca  ugc gu     aaau  a
     uuuu  c              CC              a              a  c     aacu  c   cu   u  uuaaa    aa 


Annotation confidence Not enough data
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Genome context
Chr1: 28898184-28898372 [+]

Database links

Mature lja-miR11097c-3p

Accession MIMAT0043767
Description Lotus japonicus lja-miR11097c-3p mature miRNA
Sequence 149 - AAAAAACUUUACACCGUCGGU - 169
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 25967282
    micro RNA 172 (miR172) signals epidermal infection and is expressed in cells primed for bacterial invasion in Lotus japonicus roots and nodules
    "Holt DB, Gupta V, Meyer D, Abel NB, Andersen SU, Stougaard J, Markmann K"
    "New Phytol (2015) 208:241-256