miRBase entry: lja-MIR11088a

Stem-loop lja-MIR11088a


Accession
MI0035791
Description
Lotus japonicus lja-MIR11088a precursor miRNA


Sequence

cccgccgAAAUGCGGGUUGGGUUGGGCUagcccacauuugguauuuugguucaaagUCUCAACCCAACCCAUAUUUUGGCggg
((((((((((((.(((((((((((((((((((...............))))...)))).))))))))))).))))))))))))

Structure
            C           -    ---    cacauu 
cccgccgAAAUG GGGUUGGGUUG GGCU   agcc      u
|||||||||||| ||||||||||| ||||   ||||      g
gggCGGUUUUAU CCCAACCCAAC CUga   uugg      g
            A           U    aac    uuuuau 


Annotation confidence Not enough data
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Genome context
Chr4: 28947874-28947956 [-]

Database links

Mature lja-miR11088a-5p

Accession MIMAT0043769
Description Lotus japonicus lja-miR11088a-5p mature miRNA
Sequence 8 - AAAUGCGGGUUGGGUUGGGCU - 28
Evidence experimental
Illumina [1]

Mature lja-miR11088a-3p

Accession MIMAT0043770
Description Lotus japonicus lja-miR11088a-3p mature miRNA
Sequence 57 - UCUCAACCCAACCCAUAUUUUGGC - 80
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 25967282
    micro RNA 172 (miR172) signals epidermal infection and is expressed in cells primed for bacterial invasion in Lotus japonicus roots and nodules
    "Holt DB, Gupta V, Meyer D, Abel NB, Andersen SU, Stougaard J, Markmann K"
    "New Phytol (2015) 208:241-256