miRBase entry: lja-MIR11090a

Stem-loop lja-MIR11090a


Accession
MI0035795
Description
Lotus japonicus lja-MIR11090a precursor miRNA


Sequence

uaugggugaggagaagACUUUAUAAGAGAUGUGACUCauaaacuuaaugccuuaagguuuugaguuaacaugugauguugauaucucuuggugucuugcuccucgacccaug
((((((((((((((((((....(((((((((((((((((((((((((.(((....))).)))))))....))))).))).))))))))))..))))).)))))).)))))))

Structure
       -      -     UUUA          -   -     ----       u   u 
uaugggu gaggag aagAC    UAAGAGAUGU GAC UCaua    aacuuaa gcc u
||||||| |||||| |||||    |||||||||| ||| |||||    ||||||| |||  
guaccca cuccuc uucug    guucucuaua uug agugu    uugaguu ugg a
       g      g     --ug          g   u     acaa       u   a 


Annotation confidence Not enough data
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Genome context
Chr0: 22753947-22754058 [+]

Database links

Mature lja-miR11090a-5p

Accession MIMAT0043774
Description Lotus japonicus lja-miR11090a-5p mature miRNA
Sequence 17 - ACUUUAUAAGAGAUGUGACUC - 37
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 25967282
    micro RNA 172 (miR172) signals epidermal infection and is expressed in cells primed for bacterial invasion in Lotus japonicus roots and nodules
    "Holt DB, Gupta V, Meyer D, Abel NB, Andersen SU, Stougaard J, Markmann K"
    "New Phytol (2015) 208:241-256