miRBase entry: lja-MIR11090b

Stem-loop lja-MIR11090b


Accession
MI0035796
Description
Lotus japonicus lja-MIR11090b precursor miRNA


Sequence

ugaggagaagACUUUAUAAGAGAUGUGACUCauaaaccuaaugccuuaagauuuuggguuaagaugugacguuaauaucucuugauguuuugcuccucg
.(((((((((((....(((((((((((((((((((((((((............)))))))....))))).))).))))))))))..))))).)))))).

Structure
u      -     UUUA          -   -     ----       ugccu 
 gaggag aagAC    UAAGAGAUGU GAC UCaua    aaccuaa     u
 |||||| |||||    |||||||||| ||| |||||    |||||||      
 cuccuc uuuug    guucucuaua uug agugu    uuggguu     a
g      g     --ua          a   c     agaa       uuaga 


Annotation confidence Not enough data
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Genome context
Chr2: 32905721-32905819 [-]

Database links

Mature lja-miR11090b-5p

Accession MIMAT0043775
Description Lotus japonicus lja-miR11090b-5p mature miRNA
Sequence 11 - ACUUUAUAAGAGAUGUGACUC - 31
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 25967282
    micro RNA 172 (miR172) signals epidermal infection and is expressed in cells primed for bacterial invasion in Lotus japonicus roots and nodules
    "Holt DB, Gupta V, Meyer D, Abel NB, Andersen SU, Stougaard J, Markmann K"
    "New Phytol (2015) 208:241-256