miRBase entry: lja-MIR11090c

Stem-loop lja-MIR11090c


Accession
MI0035797
Description
Lotus japonicus lja-MIR11090c precursor miRNA


Sequence

gaggagaagACUUUAUAAGAGAUGUGACUCauaaaccuaaugccauaagguuuuggguuaagauguggcgucgauaucucuuagcgucuugcuccuc
(((((((((((....(((((((((((((((((((((((((.(((....))).)))))))....))))).))).))))))))))..))))).))))))

Structure
      -     UUUA          -   -     ----       u   a 
gaggag aagAC    UAAGAGAUGU GAC UCaua    aaccuaa gcc u
|||||| |||||    |||||||||| ||| |||||    ||||||| |||  
cuccuc uucug    auucucuaua cug ggugu    uuggguu ugg a
      g     --cg          g   c     agaa       u   a 


Annotation confidence Not enough data
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Genome context
Chr4: 11241834-11241930 [+]

Database links

Mature lja-miR11090c-5p

Accession MIMAT0043776
Description Lotus japonicus lja-miR11090c-5p mature miRNA
Sequence 10 - ACUUUAUAAGAGAUGUGACUC - 30
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 25967282
    micro RNA 172 (miR172) signals epidermal infection and is expressed in cells primed for bacterial invasion in Lotus japonicus roots and nodules
    "Holt DB, Gupta V, Meyer D, Abel NB, Andersen SU, Stougaard J, Markmann K"
    "New Phytol (2015) 208:241-256