Stem-loop lja-MIR11100

Accession

MI0035811

Description

Lotus japonicus lja-MIR11100 precursor miRNA

Sequence

gguuuggcaccccaCCUAUUGGGUUUCGCACCCCAcuuuauuaaaaacgggaauuuaaauuccgauuuuaauacgaaaaaaacggaaauuaaaaaaccguuauguauuuuagcauauguggcacauuuucaaccguucauugcauauaaaaaacaaaucggaauuuuaaauuccguuuugaaaacggaaauuaaauuuccguauugaauacaugGGGUGCCAAACCCAAUAGGUGGGgugccaaacc
((((((((((((((((((((((((((.((((((((...((((.((.((((((((((((.(((((.((((((.........(((((((.((((((..(((...(((.((((((((.((((((...........)))..))))))...))))).)))...)))..)))))).))))))))))))).))))).)))))))))))).)).))))..)))))))).))))))))))))))))))))))))))

Structure

                          C        cuu    a  a            a     a      uacgaaaaa       a      aa   uua   a     ---   u   --   caca 
gguuuggcaccccaCCUAUUGGGUUU GCACCCCA   uauu aa acgggaauuuaa uuccg uuuuaa         aacggaa uuaaaa  ccg   ugu uuuua   gca aug  ugg    u
|||||||||||||||||||||||||| ||||||||   |||| || |||||||||||| ||||| ||||||         ||||||| ||||||  |||   ||| |||||   ||| |||  |||    u
ccaaaccgugGGGUGGAUAACCCAAA CGUGGGgu   auaa uu ugccuuuaaauu aaggc aaaguu         uugccuu aauuuu  ggc   aca aaaau   cgu uac  gcc    u
                          C        -ac    g  a            a     a      ---------       a      aa   uaa   a     aua   -   uu   aacu 

Annotation confidence Not enough data

Genome context

Chr2: 2473704-2473950 [-]

Mature lja-miR11100-5p

• Accession: MIMAT0043794
• Description: Lotus japonicus lja-miR11100-5p mature miRNA
• Sequence: 15 - CCUAUUGGGUUUCGCACCCCA - 35
• Evidence: experimental ; Illumina [1]

Mature lja-miR11100-3p

• Accession: MIMAT0043795
• Description: Lotus japonicus lja-miR11100-3p mature miRNA
• Sequence: 215 - GGGUGCCAAACCCAAUAGGUGGG - 237
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 25967282
   micro RNA 172 (miR172) signals epidermal infection and is expressed in cells primed for bacterial invasion in Lotus japonicus roots and nodules
   "Holt DB, Gupta V, Meyer D, Abel NB, Andersen SU, Stougaard J, Markmann K"
   "New Phytol (2015) 208:241-256