miRBase entry: lja-MIR11103a

Stem-loop lja-MIR11103a


Accession
MI0035816
Description
Lotus japonicus lja-MIR11103a precursor miRNA


Sequence

ggauccucuccggugaaauucucucaauuuuucuccaguggacauuuguggcgguuuugaaccgccacaaaauuuuuccagcugccacaaaauacugcugaaaaaaauugacagacuuuguggcagcuggaaacauuuuguggcgguccaaaaccgccacaaauguccacuggagaaaaCUUGAGAGGAUUUCACUGGAGaggaucc
(((((((((((((((((((((((((((.(((((((((((((((((((((((((((((((.(((((((((((((.(((((((((((((((((.(.((((...........).)))).))))))))))))))))).))))))))))))).))))))))))))))))))))))))))))))).)))))))))))))))))))))))))))

Structure
                           u                               a             u                 a a   - ugaa 
ggauccucuccggugaaauucucucaa uuuucuccaguggacauuuguggcgguuuug accgccacaaaau uuuccagcugccacaaa u cug c    a
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||| | ||| |    a
ccuaggaGAGGUCACUUUAGGAGAGUU aaaagaggucaccuguaaacaccgccaaaac uggcgguguuuua aaaggucgacgguguuu a gac g    a
                           C                               c             c                 c -   a uuaa 


Annotation confidence Not enough data
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Genome context
Chr3: 17464833-17465039 [-]

Database links

Mature lja-miR11103a-3p

Accession MIMAT0043800
Description Lotus japonicus lja-miR11103a-3p mature miRNA
Sequence 180 - CUUGAGAGGAUUUCACUGGAG - 200
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 25967282
    micro RNA 172 (miR172) signals epidermal infection and is expressed in cells primed for bacterial invasion in Lotus japonicus roots and nodules
    "Holt DB, Gupta V, Meyer D, Abel NB, Andersen SU, Stougaard J, Markmann K"
    "New Phytol (2015) 208:241-256