miRBase entry: lja-MIR11105a

Stem-loop lja-MIR11105a


Accession
MI0035821
Description
Lotus japonicus lja-MIR11105a precursor miRNA


Sequence

ugauaccauGUAAGAUUGGAUACUCUCACCauaaauugugugugagguggacaauauuauuuauauua
(((((....((((.((((..(((.(((((((((...)))).))))))))..)))).))))...)))))

Structure
     ccau    G    GA   U     -    a 
ugaua    GUAA AUUG  UAC CUCAC Caua  
|||||    |||| ||||  ||| ||||| |||| a
auuau    uauu uaac  gug gagug gugu  
     -auu    a    ag   -     u    u 


Annotation confidence Not enough data
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Genome context
Chr1: 31454366-31454433 [+]

Database links

Mature lja-miR11105a-5p

Accession MIMAT0043807
Description Lotus japonicus lja-miR11105a-5p mature miRNA
Sequence 10 - GUAAGAUUGGAUACUCUCACC - 30
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 25967282
    micro RNA 172 (miR172) signals epidermal infection and is expressed in cells primed for bacterial invasion in Lotus japonicus roots and nodules
    "Holt DB, Gupta V, Meyer D, Abel NB, Andersen SU, Stougaard J, Markmann K"
    "New Phytol (2015) 208:241-256