miRBase entry: lja-MIR11107a

Stem-loop lja-MIR11107a


Accession
MI0035826
Description
Lotus japonicus lja-MIR11107a precursor miRNA


Sequence

uccugcggauuuggCCAAAUAAUACACUGAACUAACCaccuaaauacacaugacuaaccauaaagcacauaaccguguaaacucaguugaaauuccuaaauucaauuuuacacgguucugugcuuuaugguuagucauguguauuuaggugguUAGUUCAGUGUAUUAUUUGGCcaaauccguagga
(((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((.(((((((((((....((((((.........))))))))))))))))).)))))))))))))))))))))))))))))))))))))))))))))))))))))))))))))))))))))

Structure
                                                                     u           cuca      auu 
uccugcggauuuggCCAAAUAAUACACUGAACUAACCaccuaaauacacaugacuaaccauaaagcaca aaccguguaaa    guugaa   c
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||    ||||||   c
aggaugccuaaacCGGUUUAUUAUGUGACUUGAUugguggauuuauguguacugauugguauuucgugu uuggcacauuu    uaacuu   u
                                                                     c           ----      aaa 


Annotation confidence Not enough data
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Genome context
Chr2: 36247474-36247660 [+]

Database links

Mature lja-miR11107a-5p

Accession MIMAT0043813
Description Lotus japonicus lja-miR11107a-5p mature miRNA
Sequence 15 - CCAAAUAAUACACUGAACUAACC - 37
Evidence experimental
Illumina [1]

Mature lja-miR11107a-3p

Accession MIMAT0043814
Description Lotus japonicus lja-miR11107a-3p mature miRNA
Sequence 154 - UAGUUCAGUGUAUUAUUUGGC - 174
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 25967282
    micro RNA 172 (miR172) signals epidermal infection and is expressed in cells primed for bacterial invasion in Lotus japonicus roots and nodules
    "Holt DB, Gupta V, Meyer D, Abel NB, Andersen SU, Stougaard J, Markmann K"
    "New Phytol (2015) 208:241-256