miRBase entry: lja-MIR11082l

Stem-loop lja-MIR11082l


Accession
MI0035830
Description
Lotus japonicus lja-MIR11082l precursor miRNA


Sequence

gccgauagcuuuuugugugauuucucuacggaaaUCACAGAGAGUUGGUUGGACU
.((((((((((((..((((((((((....))))))))))))))))).)))))...

Structure
--g     -       ug          c 
   ccgau agcuuuu  ugugauuucu u
   ||||| |||||||  ||||||||||  
   GGUUG UUGAGAG  ACACUaaagg a
UCA     G       --          c 


Annotation confidence Not enough data
Do you think this miRNA is real?

Genome context
Chr0: 20895315-20895369 [-]
Clustered miRNAs
1 other miRNA is < 10 kb from lja-MIR11082l
Name Accession Chromosome Start End Strand Confidence




Database links

Mature lja-miR11082l-3p

Accession MIMAT0043820
Description Lotus japonicus lja-miR11082l-3p mature miRNA
Sequence 35 - UCACAGAGAGUUGGUUGGACU - 55
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 25967282
    micro RNA 172 (miR172) signals epidermal infection and is expressed in cells primed for bacterial invasion in Lotus japonicus roots and nodules
    "Holt DB, Gupta V, Meyer D, Abel NB, Andersen SU, Stougaard J, Markmann K"
    "New Phytol (2015) 208:241-256