miRBase entry: lja-MIR11108b

Stem-loop lja-MIR11108b


Accession
MI0035832
Description
Lotus japonicus lja-MIR11108b precursor miRNA


Sequence

gggauugucuaaaugaccuaugauaaaguuuggguuaaauaacccaucaucuaaucacauuagagauaagugaguugaaauuucuauauuuuauuuauuaauuuauuuccaauugacuuaucuccaaugugauugaaugauggguuauuuaacucaaacuuuaUCAUGGGUCAUUUAGACAACCc
(((.((((((((((((((((((((((((((((((((((((((((((((((.((((((((((.(((((((((.(((((((((....(((.......)))......)))).))))).))))))))).)))))))))).)))))))))))))))))))))))))))))))))))))))))))))))))

Structure
   a                                              c          a         g     -    --uucu   uu 
ggg uugucuaaaugaccuaugauaaaguuuggguuaaauaacccaucau uaaucacauu gagauaagu aguug aaau      aua  u
||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||| ||||| ||||      |||  u
cCC AACAGAUUUACUGGGUACUauuucaaacucaauuuauuggguagua guuaguguaa cucuauuca uuaac uuua      uau  a
   -                                              a          c         g     c    uuuaau   uu 


Annotation confidence Not enough data
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Genome context
Chr3: 28128395-28128579 [+]

Database links

Mature lja-miR11108b-3p

Accession MIMAT0043823
Description Lotus japonicus lja-miR11108b-3p mature miRNA
Sequence 164 - UCAUGGGUCAUUUAGACAACC - 184
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 25967282
    micro RNA 172 (miR172) signals epidermal infection and is expressed in cells primed for bacterial invasion in Lotus japonicus roots and nodules
    "Holt DB, Gupta V, Meyer D, Abel NB, Andersen SU, Stougaard J, Markmann K"
    "New Phytol (2015) 208:241-256