miRBase entry: lja-MIR11111

Stem-loop lja-MIR11111


Accession
MI0035837
Description
Lotus japonicus lja-MIR11111 precursor miRNA


Sequence

accaaguagagccgggauccucucaaguguaaaaaaacuugagaauguuaaguuuuaccauuucaccauuaacuuuuguguagauaaugaaugaaaaauaagauaaaauaaaauuaauggUGAGAUGAUGAAACUUGACACucucaaguuuuuuuacacaugagaggauccaaaccaaacuuggu
(((((((.......(((((((((((.((((((((((((((((((.((((((((((((.((((((((((((((.((((((............................)))))))))))))))))))).)))))))))))).)))))))))))))))))).))))))))))).......)))))))

Structure
       agagccg           a                  a            c              c      guagauaaugaau 
accaagu       ggauccucuca guguaaaaaaacuugaga uguuaaguuuua cauuucaccauuaa uuuugu             g
|||||||       ||||||||||| |||||||||||||||||| |||||||||||| |||||||||||||| ||||||              
ugguuca       ccuaggagagu cacauuuuuuugaacucu ACAGUUCAAAGU GUAGAGUgguaauu aaaaua             a
       aaccaaa           a                  C            A              -      aaauagaauaaaa 


Annotation confidence Not enough data
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Genome context
Chr2: 26398948-26399132 [+]
Clustered miRNAs
1 other miRNA is < 10 kb from lja-MIR11111
Name Accession Chromosome Start End Strand Confidence




Database links

Mature lja-miR11111-3p

Accession MIMAT0043830
Description Lotus japonicus lja-miR11111-3p mature miRNA
Sequence 121 - UGAGAUGAUGAAACUUGACAC - 141
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 25967282
    micro RNA 172 (miR172) signals epidermal infection and is expressed in cells primed for bacterial invasion in Lotus japonicus roots and nodules
    "Holt DB, Gupta V, Meyer D, Abel NB, Andersen SU, Stougaard J, Markmann K"
    "New Phytol (2015) 208:241-256