miRBase entry: lja-MIR11097i

Stem-loop lja-MIR11097i


Accession
MI0035847
Description
Lotus japonicus lja-MIR11097i precursor miRNA


Sequence

aaacuuuacaccgucgugcauagaaauuaaacucuuaaaucauucccauuaaauauuauuaauaagaguUUAAUGGAUAUGCACUGACAGuauaaaauaguuu
....((((.((.((((((((((...((((((((((((.........................))))))))))))...))))))).))).)).)))).......

Structure
---aaac    c  c   -       gaa            aaucauuccca 
       uuua ac guc gugcaua   auuaaacucuua           u
       |||| || ||| |||||||   ||||||||||||           u
       aaau uG CAG CACGUAU   UAAUUugagaau           a
uuugaua    a  A   U       AGG            aauuauuauaa 


Annotation confidence Not enough data
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Genome context
Chr1: 41736703-41736805 [+]

Database links

Mature lja-miR11097i-3p

Accession MIMAT0043844
Description Lotus japonicus lja-miR11097i-3p mature miRNA
Sequence 70 - UUAAUGGAUAUGCACUGACAG - 90
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 25967282
    micro RNA 172 (miR172) signals epidermal infection and is expressed in cells primed for bacterial invasion in Lotus japonicus roots and nodules
    "Holt DB, Gupta V, Meyer D, Abel NB, Andersen SU, Stougaard J, Markmann K"
    "New Phytol (2015) 208:241-256