miRBase entry: lja-MIR11117b

Stem-loop lja-MIR11117b


Accession
MI0035851
Description
Lotus japonicus lja-MIR11117b precursor miRNA


Sequence

cuuucaccuucuaccucuuucucuauaacccaaaucacauaaauucaaaaggaagaacaaggugaaugugauaaacauauagauuuuuuuaggauuuugaauuucuagguuuaaggauuugaaUUAUGGAGGAAGAGGAAGAAGguggaag
((((((((((((.(((((((((((((((..((((((((..((((((((((....(((.(((((..(((((.....)))))..))))))))....))))))))))....)).....))))))..))))))))))))))).))))))))))))

Structure
            a               cc      -----  --au          ggaa   c     ga     a 
cuuucaccuucu ccucuuucucuauaa  caaauc     ac    aaauucaaaa    gaa aaggu  augug u
|||||||||||| |||||||||||||||  ||||||     ||    ||||||||||    ||| |||||  ||||| a
gaaggugGAAGA GGAGAAGGAGGUAUU  guuuag     ug    uuuaaguuuu    uuu uuuua  uauac a
            A               aa      gaauu  gauc          agga   -     ga     a 


Annotation confidence Not enough data
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Genome context
Chr2: 9554716-9554866 [+]

Database links

Mature lja-miR11117b-3p

Accession MIMAT0043849
Description Lotus japonicus lja-miR11117b-3p mature miRNA
Sequence 124 - UUAUGGAGGAAGAGGAAGAAG - 144
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 25967282
    micro RNA 172 (miR172) signals epidermal infection and is expressed in cells primed for bacterial invasion in Lotus japonicus roots and nodules
    "Holt DB, Gupta V, Meyer D, Abel NB, Andersen SU, Stougaard J, Markmann K"
    "New Phytol (2015) 208:241-256