miRBase entry: lja-MIR11119

Stem-loop lja-MIR11119


Accession
MI0035853
Description
Lotus japonicus lja-MIR11119 precursor miRNA


Sequence

uuuuugugUUCGUAUCGUGACCUGUAUCGcacauaucgcaugaguaucgcacgauacguaucccgauaugauacaaaaa
.((((((((.(((((((.((..(((((((..(((((.......)))).)..)))))))..)).))))))))))))))).

Structure
u        U       U  CC       ca -    cg 
 uuuugugU CGUAUCG GA  UGUAUCG  c auau  c
 |||||||| ||||||| ||  |||||||  | ||||  a
 aaaacaua guauagc cu  gcauagc  g uaug  u
a        -       c  au       ac c    ag 


Annotation confidence Not enough data
Do you think this miRNA is real?

Genome context
Chr1: 52220998-52221076 [-]

Database links

Mature lja-miR11119-5p

Accession MIMAT0043852
Description Lotus japonicus lja-miR11119-5p mature miRNA
Sequence 9 - UUCGUAUCGUGACCUGUAUCG - 29
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 25967282
    micro RNA 172 (miR172) signals epidermal infection and is expressed in cells primed for bacterial invasion in Lotus japonicus roots and nodules
    "Holt DB, Gupta V, Meyer D, Abel NB, Andersen SU, Stougaard J, Markmann K"
    "New Phytol (2015) 208:241-256