Stem-loop lja-MIR11103c

Accession

MI0035855

Description

Lotus japonicus lja-MIR11103c precursor miRNA

Sequence

aacuaggggaugggauccucuccaguggauuuuccucaaguuUUCUCCAGUGGACAUUUGUGGcgguuuggaaccgccacaaaauguuggaugcugccacaaaaucuaucaauuuuuugcagcaccauuuuguggcagcuucacagacauuuuguggcgguuccaaaccgccACAAAAUUCCACUGGAGACAAuaugaggaaaaucuacuggagaggaucuggacccuugaacuaguu
...((((((.(.((((((((((((((((((((((((((.(((.(((((((((((..(((((((((((((((((((((((((((((((((((.(((((((((((((((..(((....))).))....))))))))))))).)).)).)))))))))))))))))))))))))))))))..))))))))))).))).)))))))))))))))))))))))))).).))))))........

Structure

-----aac      a g                          a   U           CA                               -  -  u             ----  au   u 
        uagggg u ggauccucuccaguggauuuuccuca guu UCUCCAGUGGA  UUUGUGGcgguuuggaaccgccacaaaaugu ug ga gcugccacaaaau    cu  caa u
        |||||| | |||||||||||||||||||||||||| ||| |||||||||||  ||||||||||||||||||||||||||||||| || || |||||||||||||    ||  |||  
        guuccc g ucuaggagaggucaucuaaaaggagu uAA AGAGGUCACCU  AAACAccgccaaaccuuggcgguguuuuaca ac cu cgacgguguuuua    ga  guu u
uugaucaa      a g                          a   C           UA                               g  a  u             ccac  -c   u 

Annotation confidence Not enough data

Genome context

Chr4: 4033488-4033725 [+]

Mature lja-miR11103c-5p

• Accession: MIMAT0043854
• Description: Lotus japonicus lja-miR11103c-5p mature miRNA
• Sequence: 43 - UUCUCCAGUGGACAUUUGUGG - 63
• Evidence: experimental ; Illumina [1]

Mature lja-miR11103c-3p

• Accession: MIMAT0043855
• Description: Lotus japonicus lja-miR11103c-3p mature miRNA
• Sequence: 173 - ACAAAAUUCCACUGGAGACAA - 193
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 25967282
   micro RNA 172 (miR172) signals epidermal infection and is expressed in cells primed for bacterial invasion in Lotus japonicus roots and nodules
   "Holt DB, Gupta V, Meyer D, Abel NB, Andersen SU, Stougaard J, Markmann K"
   "New Phytol (2015) 208:241-256