Stem-loop lja-MIR11120

Accession

MI0035856

Description

Lotus japonicus lja-MIR11120 precursor miRNA

Sequence

ggcguugaauuaauuuUUGGUUGGAAAGUCCUCGAACcauuauuuuuuuaaaauuuucauacgagaauaaauuuuaguagaauuauuguUCACGGAUUCUUCCCGCCAAAAaguuauucuaaugcc
((((((((((...((((((((.(((((((((..((((.((.(((((.(((((((((((......))..))))))))).))))).)).))))..))))).)))).))))))))...)))).))))))

Structure

      -    uaa        U    -     UC    c  u     u         --  au 
ggcguu gaau   uuuUUGGU GGAA AGUCC  GAAC au auuuu uuaaaauuu  uc  a
|||||| ||||   |||||||| |||| |||||  |||| || ||||| |||||||||  ||   
ccguaa cuua   aAAAACCG CCUU UUAGG  CUug ua uaaga gauuuuaaa  ag  c
      u    uug        C    C     CA    u  u     u         ua  ag 

Annotation confidence Not enough data

Genome context

Chr1: 38474649-38474774 [-]

Clustered miRNAs

1 other miRNA is < 10 kb from lja-MIR11120

Mature lja-miR11120-5p

• Accession: MIMAT0043856
• Description: Lotus japonicus lja-miR11120-5p mature miRNA
• Sequence: 17 - UUGGUUGGAAAGUCCUCGAAC - 37
• Evidence: experimental ; Illumina [1]

Mature lja-miR11120-3p

• Accession: MIMAT0043857
• Description: Lotus japonicus lja-miR11120-3p mature miRNA
• Sequence: 90 - UCACGGAUUCUUCCCGCCAAAA - 111
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 25967282
   micro RNA 172 (miR172) signals epidermal infection and is expressed in cells primed for bacterial invasion in Lotus japonicus roots and nodules
   "Holt DB, Gupta V, Meyer D, Abel NB, Andersen SU, Stougaard J, Markmann K"
   "New Phytol (2015) 208:241-256