miRBase entry: lja-MIR11108d

Stem-loop lja-MIR11108d


Accession
MI0035877
Description
Lotus japonicus lja-MIR11108d precursor miRNA


Sequence

gggguugucuaaaugacccaugauaaaguuugaguuaaauaaccCAUCAUCCAAUCAUAUUGGAGAuaaaugaguuggaaauaaauuaauaaauaaaauauagaaauuccaacucacuuauuUCCAAUGUGAUUGGAUGAUGGGuuauuuaauccaaacuuuaucaugggucauuuagacaacccc
((((((((((((((((((((((((((((((((.((((((((((((((((((((((((((((((((((((.((((((((((..........................)))))))))).)))))))))))))))))))))))))))))))))))).))))))))))))))))))))))))))))))))

Structure
                                a                                    a          auaaauuaauaa 
gggguugucuaaaugacccaugauaaaguuug guuaaauaaccCAUCAUCCAAUCAUAUUGGAGAuaa ugaguuggaa            a
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||             
ccccaacagauuuacuggguacuauuucaaac uaauuuauuGGGUAGUAGGUUAGUGUAACCUuuauu acucaaccuu            u
                                c                                    c          aaagauauaaaa 


Annotation confidence Not enough data
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Genome context
Chr3: 39981682-39981867 [-]

Database links

Mature lja-miR11108d-5p

Accession MIMAT0043885
Description Lotus japonicus lja-miR11108d-5p mature miRNA
Sequence 45 - CAUCAUCCAAUCAUAUUGGAGA - 66
Evidence experimental
Illumina [1]

Mature lja-miR11108d-3p

Accession MIMAT0043886
Description Lotus japonicus lja-miR11108d-3p mature miRNA
Sequence 123 - UCCAAUGUGAUUGGAUGAUGGG - 144
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 25967282
    micro RNA 172 (miR172) signals epidermal infection and is expressed in cells primed for bacterial invasion in Lotus japonicus roots and nodules
    "Holt DB, Gupta V, Meyer D, Abel NB, Andersen SU, Stougaard J, Markmann K"
    "New Phytol (2015) 208:241-256