miRBase entry: lja-MIR11130

Stem-loop lja-MIR11130


Accession
MI0035879
Description
Lotus japonicus lja-MIR11130 precursor miRNA


Sequence

uucuucuauuugaaugugUGGUAAAUGAUACAUCUCCAAGaagcaucuccaagaagcaucuccaagacauacauacagaaauguuguaauauuuauagucaggaaaugcuucuucugagaaugcuucuUCUGGUGUCUCAUUUAGCCACAcuuuuggauuaaggagaa
.(((((((((((((.(((((((((((((.(((((...((((((((((((.(((((((((.(((..(((.((((.(((....))))))).........))).))).)))))))))..))).)))))))))..))))).)))))).))))))).)))))))..)))))).

Structure
u      --       u       -      U     UCC         -   -c         c   aa   --------a    u   g 
 ucuucu  auuugaa gugUGGU AAAUGA ACAUC   AAGaagcau cuc  aagaagcau ucc  gac         uaca aca a
 ||||||  ||||||| ||||||| |||||| |||||   ||||||||| |||  ||||||||| |||  |||         |||| |||  
 agagga  uagguuu cACACCG UUUACU UGUGG   Uucuucgua gag  uucuucgua agg  cug         augu ugu a
a      au       u       A      C     -UC         a   uc         a   -a   auauuuaua    -   a 


Annotation confidence Not enough data
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Genome context
Chr4: 9315918-9316085 [+]

Database links

Mature lja-miR11130-5p

Accession MIMAT0043889
Description Lotus japonicus lja-miR11130-5p mature miRNA
Sequence 19 - UGGUAAAUGAUACAUCUCCAAG - 40
Evidence experimental
Illumina [1]

Mature lja-miR11130-3p

Accession MIMAT0043890
Description Lotus japonicus lja-miR11130-3p mature miRNA
Sequence 129 - UCUGGUGUCUCAUUUAGCCACA - 150
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 25967282
    micro RNA 172 (miR172) signals epidermal infection and is expressed in cells primed for bacterial invasion in Lotus japonicus roots and nodules
    "Holt DB, Gupta V, Meyer D, Abel NB, Andersen SU, Stougaard J, Markmann K"
    "New Phytol (2015) 208:241-256