Stem-loop lja-MIR11137

Accession

MI0035893

Description

Lotus japonicus lja-MIR11137 precursor miRNA

Sequence

uuccuugcaguuuaUUUUUGGCAUCAUGAUACUGUGucuucagagccuuuucaacuugauugcguugagcgcucugcaaugguacauuuaauccgcagugcucgaccugauuauagagcgaucaaccuaaucaagucgagaagguucuuaagacacgguacaaugaugccaaaaauaaacugcauggaa
.(((.((((((((((((((((((((((..(((((((((((.(((((((((((.(((((((((.(((((.(((((((.((((((((............))))).......))).))))))).))))).))))))))).))))))))))).)))))))))))..)))))))))))))))))))))).))).

Structure

u   u                      GA           c           a         c     g       c   -------     auuua 
 ucc ugcaguuuaUUUUUGGCAUCAU  UACUGUGucuu agagccuuuuc acuugauug guuga cgcucug aau       gguac     a
 ||| ||||||||||||||||||||||  ||||||||||| ||||||||||| ||||||||| ||||| ||||||| |||       |||||      
 agg acgucaaauaaaaaccguagua  auggcacagaa ucuuggaagag ugaacuaau caacu gcgagau uua       ucgug     u
a   u                      ac           u           c         c     a       a   guccagc     acgcc 

Annotation confidence Not enough data

Genome context

Chr0: 3148801-3148989 [-]

Mature lja-miR11137-5p

• Accession: MIMAT0043909
• Description: Lotus japonicus lja-miR11137-5p mature miRNA
• Sequence: 15 - UUUUUGGCAUCAUGAUACUGUG - 36
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 25967282
   micro RNA 172 (miR172) signals epidermal infection and is expressed in cells primed for bacterial invasion in Lotus japonicus roots and nodules
   "Holt DB, Gupta V, Meyer D, Abel NB, Andersen SU, Stougaard J, Markmann K"
   "New Phytol (2015) 208:241-256