miRBase entry: lja-MIR11154

Stem-loop lja-MIR11154


Accession
MI0035926
Description
Lotus japonicus lja-MIR11154 precursor miRNA


Sequence

ggauacugugugcaugucuUGAUACACGGUAGAAAAUCACAGCaaaacaaauaguaauuuacuuugauugugauuuuuaccguguauccaaacauucaucaaauuaguuuuugucc
((((((((((((.((((...(((((((((((((((.((((((((((..((((....))))..)))).)))))))))))))))))))))...)))).)).))...))))....))))

Structure
    ----    ---  -  c    cuU               A      -    ac    a 
ggau    acug   ug ug augu   GAUACACGGUAGAAA UCACAG Caaa  aaau g
||||    ||||   || || ||||   ||||||||||||||| |||||| ||||  ||||  
ccug    ugau   ac ac uaca   cuaugugccauuuuu aguguu guuu  uuua u
    uuuu    uaa  u  u    aac               -      a    ca    a 


Annotation confidence Not enough data
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Genome context
Chr4: 1243272-1243387 [+]

Database links

Mature lja-miR11154-5p

Accession MIMAT0043948
Description Lotus japonicus lja-miR11154-5p mature miRNA
Sequence 20 - UGAUACACGGUAGAAAAUCACAGC - 43
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 25967282
    micro RNA 172 (miR172) signals epidermal infection and is expressed in cells primed for bacterial invasion in Lotus japonicus roots and nodules
    "Holt DB, Gupta V, Meyer D, Abel NB, Andersen SU, Stougaard J, Markmann K"
    "New Phytol (2015) 208:241-256