miRBase entry: lja-MIR11158

Stem-loop lja-MIR11158


Accession
MI0035933
Description
Lotus japonicus lja-MIR11158 precursor miRNA


Sequence

gcucucaugcuucgagcuuggugucuuguggacugggcgagaccccagggucccucgcccaggagACUCAACCUUAGGCGUGGGACGCA
((((((((((((.(((.((((.(((((.....((((((((((((....))))..))))))))))))))))).))))))))))))).)).

Structure
-  -          c   c    u     gugga        --    c 
 gc ucucaugcuu gag uugg gucuu     cugggcga  gacc c
 || |||||||||| ||| |||| |||||     ||||||||  ||||  
 CG AGGGUGCGGA UUC AACU CAgag     gacccgcu  cugg a
A  C          -   C    -     -----        cc    g 


Annotation confidence Not enough data
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Genome context
Chr0: 27907024-27907112 [+]

Database links

Mature lja-miR11158-3p

Accession MIMAT0043955
Description Lotus japonicus lja-miR11158-3p mature miRNA
Sequence 66 - ACUCAACCUUAGGCGUGGGACGCA - 89
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 25967282
    micro RNA 172 (miR172) signals epidermal infection and is expressed in cells primed for bacterial invasion in Lotus japonicus roots and nodules
    "Holt DB, Gupta V, Meyer D, Abel NB, Andersen SU, Stougaard J, Markmann K"
    "New Phytol (2015) 208:241-256