Stem-loop lja-MIR11089c

Accession

MI0035942

Description

Lotus japonicus lja-MIR11089c precursor miRNA

Sequence

gagucuaaaccaaagaaucAUGAUUUUAGAGGGACCUAAGACCaugauaaaaauugguuuuaagcuccuuuagaaucaugguucuuuguuuuagguc
...((((((.(((((((((((((((((((((((.(.((((((((..........)))))))).).))))))))))))))))))))))).))))))..

Structure

gag      c                       A C        ugau 
   ucuaaa caaagaaucAUGAUUUUAGAGGG C UAAGACCa    a
   |||||| ||||||||||||||||||||||| | ||||||||     
   ggauuu guuucuugguacuaagauuuccu g auuuuggu    a
-cu      u                       c a        uaaa 

Annotation confidence Not enough data

Genome context

Chr3: 6421902-6421998 [+]

Mature lja-miR11089c-5p

• Accession: MIMAT0043964
• Description: Lotus japonicus lja-miR11089c-5p mature miRNA
• Sequence: 20 - AUGAUUUUAGAGGGACCUAAGACC - 43
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 25967282
   micro RNA 172 (miR172) signals epidermal infection and is expressed in cells primed for bacterial invasion in Lotus japonicus roots and nodules
   "Holt DB, Gupta V, Meyer D, Abel NB, Andersen SU, Stougaard J, Markmann K"
   "New Phytol (2015) 208:241-256