miRBase entry: lja-MIR11166

Stem-loop lja-MIR11166


Accession
MI0035947
Description
Lotus japonicus lja-MIR11166 precursor miRNA


Sequence

agauccauuguuacgguccucuuugcuaucuguauaauggcaaauauaguagcugugguuugagaaaguaggccagaaggccgaauaacucgccuugugaacuauuugauCAUUGUAUGGAUAGUAGAGGGGCUcccgaguccagugguaucu
((((((((((...(((.((((((((((((((((((((((((((..(((((.((...(((..(((......((((....))))......))))))..))..)))))))).)))))))))))))))))))))))...)))....)))))).))))

Structure
    -      -uua   --u                       -   au     -a  ugu   uu   aaagua    a 
agau ccauug    cgg   ccucuuugcuaucuguauaaugg caa  auagu  gc   ggu  gag      ggcc g
|||| ||||||    |||   ||||||||||||||||||||||| |||  |||||  ||   |||  |||      ||||  
ucua ggugac    gcc   GGGGAGAUGAUAGGUAUGUUACu guu  uauca  ug   ccg  cuc      ccgg a
    u      cuga   cUC                       a   --     ag  -uu   --   aauaag    a 


Annotation confidence Not enough data
Do you think this miRNA is real?

Genome context
Chr2: 22051964-22052116 [+]

Database links

Mature lja-miR11166-3p

Accession MIMAT0043969
Description Lotus japonicus lja-miR11166-3p mature miRNA
Sequence 111 - CAUUGUAUGGAUAGUAGAGGGGCU - 134
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 25967282
    micro RNA 172 (miR172) signals epidermal infection and is expressed in cells primed for bacterial invasion in Lotus japonicus roots and nodules
    "Holt DB, Gupta V, Meyer D, Abel NB, Andersen SU, Stougaard J, Markmann K"
    "New Phytol (2015) 208:241-256