miRBase entry: lja-MIR11108o

Stem-loop lja-MIR11108o


Accession
MI0035954
Description
Lotus japonicus lja-MIR11108o precursor miRNA


Sequence

uaaaguuugaguuaaauaacucacuauccaauuacauuggagauaaaugaauuggaauuuauauauuuuauuuauuaauuuuuuccaacucauuuaucuucaauguGAUUGGAUGAUGAGUUAUUUAACCcaaacuuua
(((((((((.(((((((((((((.((((((((((((((((((((((((((.((((((.........................)))))).)))))))))))))))))))))))))).))))))))))))).)))))))))

Structure
         a             c                          a      uuuauauauuu 
uaaaguuug guuaaauaacuca uauccaauuacauuggagauaaauga uuggaa           u
||||||||| ||||||||||||| |||||||||||||||||||||||||| ||||||           a
auuucaaac CAAUUUAUUGAGU GUAGGUUAGuguaacuucuauuuacu aaccuu           u
         C             A                          c      uuuuaauuauu 


Annotation confidence Not enough data
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Genome context
Chr2: 4325653-4325791 [+]

Database links

Mature lja-miR11108o-3p

Accession MIMAT0043976
Description Lotus japonicus lja-miR11108o-3p mature miRNA
Sequence 107 - GAUUGGAUGAUGAGUUAUUUAACC - 130
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 25967282
    micro RNA 172 (miR172) signals epidermal infection and is expressed in cells primed for bacterial invasion in Lotus japonicus roots and nodules
    "Holt DB, Gupta V, Meyer D, Abel NB, Andersen SU, Stougaard J, Markmann K"
    "New Phytol (2015) 208:241-256