miRBase entry: lja-MIR11171

Stem-loop lja-MIR11171


Accession
MI0035957
Description
Lotus japonicus lja-MIR11171 precursor miRNA


Sequence

GCUUGACGAUCGGGCCUGGAGAGCcgacuccuccgggacucgaaaucaagcnn
((((((...((((((((((((((....)).))))))).)))))..))))))..

Structure
--      CGA     -       -  C 
  GCUUGA   UCGGG CCUGGAG AG c
  ||||||   ||||| ||||||| ||  
  cgaacu   agcuc gggccuc uc g
nn      -aa     a       c  a 


Annotation confidence Not enough data
Do you think this miRNA is real?

Genome context
Unknown

Database links

Mature lja-miR11171-5p

Accession MIMAT0043980
Description Lotus japonicus lja-miR11171-5p mature miRNA
Sequence 1 - GCUUGACGAUCGGGCCUGGAGAGC - 24
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 25967282
    micro RNA 172 (miR172) signals epidermal infection and is expressed in cells primed for bacterial invasion in Lotus japonicus roots and nodules
    "Holt DB, Gupta V, Meyer D, Abel NB, Andersen SU, Stougaard J, Markmann K"
    "New Phytol (2015) 208:241-256