miRBase entry: lja-MIR5287d

Stem-loop lja-MIR5287d


Accession
MI0035969
Description
Lotus japonicus lja-MIR5287d precursor miRNA


Sequence

ccuccgauuacuauuaucauaaaaagaaacaaguuuuuaaauucguucaauaaaugauguaucuagucuauaauaaugacuagauacauuauuuauucaauuaauuuaaaauguuauuuuUUUGCUUAUAAUAGUGACCGGAGG
((((((.((((((((((..((((((((((((...(((((((((.(((.((((((((((((((((((((.........)))))))))))))))))))).))).))))))))))))).))))))))...)))))))))).))))))

Structure
      a          -ca        -    agu         c   c                    uau 
ccuccg uuacuauuau   uaaaaaga aaca   uuuuaaauu guu aauaaaugauguaucuaguc   a
|||||| ||||||||||   |||||||| ||||   ||||||||| ||| ||||||||||||||||||||   a
GGAGGC AGUGAUAAUA   GUUUuuuu uugu   aaaauuuaa uaa uuauuuauuacauagaucag   u
      C          UUC        a    ---         u   c                    uaa 


Annotation confidence Not enough data
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Genome context
Chr3: 43633535-43633678 [+]

Database links

Mature lja-miR5287d-3p

Accession MIMAT0043993
Description Lotus japonicus lja-miR5287d-3p mature miRNA
Sequence 121 - UUUGCUUAUAAUAGUGACCGGAGG - 144
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 25967282
    micro RNA 172 (miR172) signals epidermal infection and is expressed in cells primed for bacterial invasion in Lotus japonicus roots and nodules
    "Holt DB, Gupta V, Meyer D, Abel NB, Andersen SU, Stougaard J, Markmann K"
    "New Phytol (2015) 208:241-256