miRBase entry: gmo-mir-187

Stem-loop gmo-mir-187


Accession
MI0035976
Description
Gadus morhua gmo-mir-187 precursor miRNA


Sequence

GGCUGCAACACAGGACAUGGGAccagccucucaaaccccUCGUGUCUUGUGUUGCAGCCAG
(((((((((((((((((((((.................)))))))))))))))))))))..

Structure
--                     Accagcc 
  GGCUGCAACACAGGACAUGGG       u
  |||||||||||||||||||||       c
  CCGACGUUGUGUUCUGUGCUc       u
GA                     cccaaac 


Annotation confidence Not enough data
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Genome context
CAEA01026030.1: 339-399 [+]

Database links

Mature gmo-miR-187-5p

Accession MIMAT0044002
Description Gadus morhua gmo-miR-187-5p mature miRNA
Sequence 1 - GGCUGCAACACAGGACAUGGGA - 22
Evidence experimental
SOLiD [1], Illumina [2]

Mature gmo-miR-187-3p

Accession MIMAT0044003
Description Gadus morhua gmo-miR-187-3p mature miRNA
Sequence 40 - UCGUGUCUUGUGUUGCAGCCAG - 61
Evidence experimental
SOLiD [1]

References

  1. PubMed ID: 25881242
    Temperature during early development has long-term effects on microRNA expression in Atlantic cod
    Bizuayehu TT, Johansen SD, Puvanendran V, Toften H, Babiak I
    BMC Genomics (2015) 16:305

  2. PubMed ID: 27128807
    Discovery of miRNAs and Their Corresponding miRNA Genes in Atlantic Cod (Gadus morhua): Use of Stable miRNAs as Reference Genes Reveals Subgroups of miRNAs That Are Highly Expressed in Particular Organs
    Andreassen R, Rangnes F, Sivertsen M, Chiang M, Tran M, Worren MM
    PLoS One (2016) 11:e0153324