miRBase entry: gmo-mir-27b

Stem-loop gmo-mir-27b


Accession
MI0035979
Description
Gadus morhua gmo-mir-27b precursor miRNA

Literature search
1 open access papers mention gmo-mir-27b
(2 sentences)

Sequence

AGAGCUUAGCUGAUUGGUGAACAgugauugaucuccucuuugUUCACAGUGGCUAAGUUCUG
(((((((((((.((((.(((((((.((.........)).)))))))))))))))))))))).

Structure
-           G    G       u  uug 
 AGAGCUUAGCU AUUG UGAACAg ga   a
 ||||||||||| |||| ||||||| ||   u
 UCUUGAAUCGG UGAC ACUUguu cu   c
G           -    -       u  ccu 


Annotation confidence Not enough data
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Genome context
CAEA01050502.1: 116-177 [-]

Database links

Mature gmo-miR-27b-5p

Accession MIMAT0044008
Description Gadus morhua gmo-miR-27b-5p mature miRNA
Sequence 1 - AGAGCUUAGCUGAUUGGUGAACA - 23
Evidence experimental
SOLiD [1], Illumina [2]

Mature gmo-miR-27b-3p

Accession MIMAT0044009
Description Gadus morhua gmo-miR-27b-3p mature miRNA
Sequence 43 - UUCACAGUGGCUAAGUUCUG - 62
Evidence experimental
SOLiD [1], Illumina [2]

References

  1. PubMed ID: 25881242
    Temperature during early development has long-term effects on microRNA expression in Atlantic cod
    Bizuayehu TT, Johansen SD, Puvanendran V, Toften H, Babiak I
    BMC Genomics (2015) 16:305

  2. PubMed ID: 27128807
    Discovery of miRNAs and Their Corresponding miRNA Genes in Atlantic Cod (Gadus morhua): Use of Stable miRNAs as Reference Genes Reveals Subgroups of miRNAs That Are Highly Expressed in Particular Organs
    Andreassen R, Rangnes F, Sivertsen M, Chiang M, Tran M, Worren MM
    PLoS One (2016) 11:e0153324