Stem-loop gmo-mir-458

Accession

MI0035980

Description

Gadus morhua gmo-mir-458 precursor miRNA

Sequence

AGCGCCAUUUCCAGAGUUAUCAgugaaugaugauuucAUAGCUCUUUAAAUGGUACUG
((.(((((((..((((((....(((((.......)))))))))))..))))))).)).

Structure

-  C       CC      AUCA     ug 
 AG GCCAUUU  AGAGUU    gugaa  a
 || |||||||  ||||||    |||||  u
 UC UGGUAAA  UCUCGA    UAcuu  g
G  A       UU      ----     ua 

Annotation confidence Not enough data

Genome context

CAEA01053274.1: 35-92 [-]

Mature gmo-miR-458-5p

• Accession: MIMAT0044010
• Description: Gadus morhua gmo-miR-458-5p mature miRNA
• Sequence: 1 - AGCGCCAUUUCCAGAGUUAUCA - 22
• Evidence: experimental ; SOLiD [1], Illumina [2]

Mature gmo-miR-458-3p

• Accession: MIMAT0044011
• Description: Gadus morhua gmo-miR-458-3p mature miRNA
• Sequence: 38 - AUAGCUCUUUAAAUGGUACUG - 58
• Evidence: experimental ; SOLiD [1]

References

1. PubMed ID: 25881242
   Temperature during early development has long-term effects on microRNA expression in Atlantic cod
   Bizuayehu TT, Johansen SD, Puvanendran V, Toften H, Babiak I
   BMC Genomics (2015) 16:305


2. PubMed ID: 27128807
   Discovery of miRNAs and Their Corresponding miRNA Genes in Atlantic Cod (Gadus morhua): Use of Stable miRNAs as Reference Genes Reveals Subgroups of miRNAs That Are Highly Expressed in Particular Organs
   Andreassen R, Rangnes F, Sivertsen M, Chiang M, Tran M, Worren MM
   PLoS One (2016) 11:e0153324