miRBase entry: gmo-mir-2188

Stem-loop gmo-mir-2188


Accession
MI0035982
Description
Gadus morhua gmo-mir-2188 precursor miRNA

Literature search
1 open access papers mention gmo-mir-2188
(2 sentences)

Sequence

AAGGUCCAACCUCACAUGUCCUgugcagcuguaggaagGCUGUGUGGGGUCAGACCUAU
.(((((..((((((((((.(((.(((....)))...))).))))))))))..)))))..

Structure
-A     CA          U   --g   a 
  AGGUC  ACCUCACAUG CCU   ugc g
  |||||  |||||||||| |||   |||  
  UCCAG  UGGGGUGUGU Gga   aug c
UA     AC          C   agg   u 


Annotation confidence Not enough data
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Genome context
CAEA01064140.1: 351-409 [-]

Database links

Mature gmo-miR-2188-5p

Accession MIMAT0044013
Description Gadus morhua gmo-miR-2188-5p mature miRNA
Sequence 1 - AAGGUCCAACCUCACAUGUCCU - 22
Evidence experimental
SOLiD [1], Illumina [2]

Mature gmo-miR-2188-3p

Accession MIMAT0044014
Description Gadus morhua gmo-miR-2188-3p mature miRNA
Sequence 39 - GCUGUGUGGGGUCAGACCUAU - 59
Evidence experimental
SOLiD [1]

References

  1. PubMed ID: 25881242
    Temperature during early development has long-term effects on microRNA expression in Atlantic cod
    Bizuayehu TT, Johansen SD, Puvanendran V, Toften H, Babiak I
    BMC Genomics (2015) 16:305

  2. PubMed ID: 27128807
    Discovery of miRNAs and Their Corresponding miRNA Genes in Atlantic Cod (Gadus morhua): Use of Stable miRNAs as Reference Genes Reveals Subgroups of miRNAs That Are Highly Expressed in Particular Organs
    Andreassen R, Rangnes F, Sivertsen M, Chiang M, Tran M, Worren MM
    PLoS One (2016) 11:e0153324