miRBase entry: gmo-mir-217

Stem-loop gmo-mir-217


Accession
MI0035997
Description
Gadus morhua gmo-mir-217 precursor miRNA


Sequence

UACUGCAUCAGGAACUGAUUGGcugaugccuaguggcCAACAGUACCUGAUGCAUUUC
...(((((((((.((((.(((((((........))))))))))).)))))))))....

Structure
-UAC         A    A       aug 
    UGCAUCAGG ACUG UUGGcug   c
    ||||||||| |||| |||||||    
    ACGUAGUCC UGAC AACcggu   c
CUUU         A    -       gau 


Annotation confidence Not enough data
Do you think this miRNA is real?

Genome context
CAEA01227347.1: 111-168 [+]

Database links

Mature gmo-miR-217-5p

Accession MIMAT0044039
Description Gadus morhua gmo-miR-217-5p mature miRNA
Sequence 1 - UACUGCAUCAGGAACUGAUUGG - 22
Evidence experimental
SOLiD [1], Illumina [2]

Mature gmo-miR-217-3p

Accession MIMAT0044040
Description Gadus morhua gmo-miR-217-3p mature miRNA
Sequence 38 - CAACAGUACCUGAUGCAUUUC - 58
Evidence experimental
SOLiD [1]

References

  1. PubMed ID: 25881242
    Temperature during early development has long-term effects on microRNA expression in Atlantic cod
    Bizuayehu TT, Johansen SD, Puvanendran V, Toften H, Babiak I
    BMC Genomics (2015) 16:305

  2. PubMed ID: 27128807
    Discovery of miRNAs and Their Corresponding miRNA Genes in Atlantic Cod (Gadus morhua): Use of Stable miRNAs as Reference Genes Reveals Subgroups of miRNAs That Are Highly Expressed in Particular Organs
    Andreassen R, Rangnes F, Sivertsen M, Chiang M, Tran M, Worren MM
    PLoS One (2016) 11:e0153324