miRBase entry: gmo-mir-29b-2

Stem-loop gmo-mir-29b-2


Accession
MI0036017
Description
Gadus morhua gmo-mir-29b-2 precursor miRNA


Sequence

CUGGUUUCACGUGGUGGUUUAGAUuugaguuccuguugucUAGCACCAUUUGAAAUCAGUGU
(((((((((.((((((..((((((...((...))...)))))))))))).)))))))))...

Structure
---         C      GU      uug  u 
   CUGGUUUCA GUGGUG  UUAGAU   ag  
   ||||||||| ||||||  ||||||   || u
   GACUAAAGU UACCAC  GAUcug   uc  
UGU         U      --      uug  c 


Annotation confidence Not enough data
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Genome context
CAEA01475371.1: 1119-1180 [+]
Clustered miRNAs
1 other miRNA is < 10 kb from gmo-mir-29b-2
Name Accession Chromosome Start End Strand Confidence




Database links

Mature gmo-miR-29b-3p

Accession MIMAT0044000
Description Gadus morhua gmo-miR-29b-3p mature miRNA
Sequence 41 - UAGCACCAUUUGAAAUCAGUGU - 62
Evidence experimental
SOLiD [1], Illumina [2]

Mature gmo-miR-29b-2-5p

Accession MIMAT0044071
Description Gadus morhua gmo-miR-29b-2-5p mature miRNA
Sequence 1 - CUGGUUUCACGUGGUGGUUUAGAU - 24
Evidence experimental
Illumina [2]

References

  1. PubMed ID: 25881242
    Temperature during early development has long-term effects on microRNA expression in Atlantic cod
    Bizuayehu TT, Johansen SD, Puvanendran V, Toften H, Babiak I
    BMC Genomics (2015) 16:305

  2. PubMed ID: 27128807
    Discovery of miRNAs and Their Corresponding miRNA Genes in Atlantic Cod (Gadus morhua): Use of Stable miRNAs as Reference Genes Reveals Subgroups of miRNAs That Are Highly Expressed in Particular Organs
    Andreassen R, Rangnes F, Sivertsen M, Chiang M, Tran M, Worren MM
    PLoS One (2016) 11:e0153324